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Samples File Detail

Samples File Detail

Column Name Type (Size) Format / Value Checks Definition / Examples / Comments
nrgr_bio_id string(14) Case sensitive.

Definition: IBX (formerly RUCDR) sample id, AKA RUID

Sample value: 03C19340

IDs are usually alphanumeric.

ind_id string(30)

Sample value: 10-10073

material string(10)

Valid Values:

DNA-EP = DNA Externally Produced

DNA-LCL = DNA from Lymphoblastoid cell line

DNA-Saliva = DNA from saliva

DNA-WB = DNA from Whole Blood

DNA-EPBC = DNA from Externally Produced Buffy Coat

miRNA-WB = miRNA from Whole Blood

NGNCDNA = non-coding DNA

RNA-LCL = RNA from Lymphoblastoid cell line

RNA-WB = RNA from Whole Blood

LCL = Lymphoblastoid cell line

CPL = Cryopreserved Lymphocytes

FCL = Fibroblast cell line

IPSC = Induced Pluripotent Cell Line

EPPL = Externally produced Plasma

OE = Olfactory Epithelial

PL = Plasma

Urine

amount decimal

For DNA-WB, DNA-EP, DNA-Saliva <= 5. For DNA-LCL <= 25. (unit = µg)

For miRNA-WB, NGNCDNA, RNA-LCL, RNA-WB, EPPL, PL, and Urine <= 1 (unit = aliquot)

For cell line materials LCL, CPL, FCL, IPSC, and OE the amount column will be ignored

Usually specified in 4 decimals, 2 is acceptable

µg or aliquot
cell_type string(7)

Valid Values:

LIVE

FROZEN

Required if material = LCL, CPL, FCL, IPSC, or OE

For all other materials the cell_type column will be ignored

purpose string

Valid Values:

Valid for "DNA" materials
DNA-SNP SNP panel genotyping
DNA-WES Whole exome sequencing
DNA-WGS Whole genome sequencing
DNA-BGE Blended Genome/Exome Sequencing
DNA-TS Targeted sequencing
DNA-TG Targeted genotyping
DNA-MA Methylation assay
DNA-CNV CNV analysis
OTHER Other DNA method - please describe in notes
Valid for "RNA" materials incl. NGNCDNA and miRNA-WB
RNA-QPCR QPCR
RNA-EA Expression Assay
RNA-SEQ RNAseq
OTHER Other RNA method - please describe in notes
Valid for "LCL"
CELL-REPROG Reprogramming
CELL-EA Expression Assay
OTHER Other cell method - please describe in notes
Valid for "CPL"
CPL-REQ Requestor derived iPSC
CPL-SAM Sampled derived iPSC
OTHER Other CPL method - please describe in notes
Valid for "iPSC" or "FCL"
CELL-REPROG Reprogramming
CELL-EA Expression Assay
OTHER Other cell method - please describe in notes
Valid for "EPPL", "OE", "PL", "Urine"
OTHER-IPSC iPSC
OTHER-EA Expression Assay
OTHER Other - please describe in notes
notes string(1000) Required if purpose is OTHER. Use this field to describe the purpose for sample request if "other". Also use this field to describe desired sample concentration.